The demo of DSG. The solid line stands for the null density ݂. The dotted line
he alternative density ݂ଵ. The pair of the filled dots stands for a non-DEG. The
riangles stands for a DEG.
ndard DSG density function ݂ሺܢ|ߠሻ given the model parameters
ߤଵ, ߪ
ଶ, ߪଵ
ଶ, ݓ, ݓଵሽ has the form shown below,
݂ሺܢ|ߠሻ ൌݓ࣡ሺܢ|ߤ, ߪ
ଶሻݓଵ࣡ሺܢ|ߤଵ, ߪଵ
ଶሻ
(6.43)
൏ݓ൏1 is the mixing coefficient or weight of the mth Gaussian
ݓଵൌ1
࣡ሺܢ|ߤ, ߪଶሻൌ
1
ඥ2ߨߪଶexp ቆെ
ሺܢെߤሻଶ
2ߪଶ
ቇ
(6.44)
ch a model, ߪ
ଶ is the variance of the null density and ߪଵ
ଶ≫ߪ
ଶ is
nce of the alternative density. When this condition is satisfied, it
en that the alternative density will be much more flattened. This
also called a two-component Gaussian mixture model. In this
ሺܢ|ߤ, ߪ
ଶmodels the uninformative subset of the data. In this
ሻ
e data has a little variation from zero, hence uninformative. Most
Gs will belong to this category, hence the null data. The other
nt ࣡ሺܢ|ߤଵ, ߪଵ
ଶሻ models the informative subset of the data. The
ts (genes) in this subset have a great deviation from zero. Most
ill have a great scale of the deviation from zero, hence very
ve. A small ߪ
ଶ naturally leads to a sharp peak centred at ߤ.
≫ߪ
ଶ, ࣡ሺܢ|ߤଵ, ߪଵ
ଶሻ approximates a uniform distribution in the
case and the identification of the null data is straightforward. The
d function of such a model is defined as below,